IL_3JBN_229
3D structure
- PDB id
- 3JBN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- AGCUUGGG*UAAAAU
- Length
- 14 nucleotides
- Bulged bases
- 3JBN|1|A|C|941, 3JBN|1|A|G|945
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBN_229 not in the Motif Atlas
- Geometric match to IL_5TBW_476
- Geometric discrepancy: 0.3902
- The information below is about IL_5TBW_476
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
3JBN|1|A|A|939
3JBN|1|A|G|940
3JBN|1|A|C|941
3JBN|1|A|U|942
3JBN|1|A|U|943
3JBN|1|A|G|944
3JBN|1|A|G|945
3JBN|1|A|G|946
*
3JBN|1|A|U|1020
3JBN|1|A|A|1021
3JBN|1|A|A|1022
3JBN|1|A|A|1023
3JBN|1|A|A|1024
3JBN|1|A|U|1025
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain 3
- 40S ribosomal protein eS26
- Chain 4
- 40S ribosomal protein eS27
- Chain A6
- 60S ribosomal protein eL30
- Chain B
- 40S ribosomal protein eS1
- Chain U
- 40S ribosomal protein uS15
Coloring options: