IL_3JBN_232
3D structure
- PDB id
- 3JBN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GGUUAAU*AAUUGUC
- Length
- 14 nucleotides
- Bulged bases
- 3JBN|1|AA|G|119, 3JBN|1|AA|U|120, 3JBN|1|AA|U|121, 3JBN|1|AA|U|156
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBN_232 not in the Motif Atlas
- Homologous match to IL_8GLP_287
- Geometric discrepancy: 0.3722
- The information below is about IL_8GLP_287
- Detailed Annotation
- Kink-turn with embedded cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_65996.1
- Basepair signature
- cWW-L-cWW-L-tSH-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
3JBN|1|AA|G|118
3JBN|1|AA|G|119
3JBN|1|AA|U|120
3JBN|1|AA|U|121
3JBN|1|AA|A|122
3JBN|1|AA|A|123
3JBN|1|AA|U|124
*
3JBN|1|AA|A|153
3JBN|1|AA|A|154
3JBN|1|AA|U|155
3JBN|1|AA|U|156
3JBN|1|AA|G|157
3JBN|1|AA|U|158
3JBN|1|AA|C|159
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A3
- 60S ribosomal protein uL29
- Chain AC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AJ
- 60S ribosomal protein eL8
- Chain AP
- 60S ribosomal protein eL15
- Chain Ab
- 60S ribosomal protein eL36
Coloring options: