IL_3JBN_232

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGUUAAU*AAUUGUC

Length

14 nucleotides

Bulged bases

3JBN|1|AA|G|119, 3JBN|1|AA|U|120, 3JBN|1|AA|U|121, 3JBN|1|AA|U|156

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBN|1|AA|G|118
3JBN|1|AA|G|119
3JBN|1|AA|U|120
3JBN|1|AA|U|121
3JBN|1|AA|A|122
3JBN|1|AA|A|123
3JBN|1|AA|U|124
*
3JBN|1|AA|A|153
3JBN|1|AA|A|154
3JBN|1|AA|U|155
3JBN|1|AA|U|156
3JBN|1|AA|G|157
3JBN|1|AA|U|158
3JBN|1|AA|C|159

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A3

60S ribosomal protein uL29

Chain AC

5.8S ribosomal RNA; 5.8S rRNA

Chain AJ

60S ribosomal protein eL8

Chain AP

60S ribosomal protein eL15

Chain Ab

60S ribosomal protein eL36