IL_3JBN_237

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AUUUA*UAUUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBN_237 not in the Motif Atlas

Geometric match to IL_8S95_002

Geometric discrepancy: 0.3321

The information below is about IL_8S95_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

3JBN|1|AA|A|523
3JBN|1|AA|U|524
3JBN|1|AA|U|525
3JBN|1|AA|U|526
3JBN|1|AA|A|527
*
3JBN|1|AA|U|628
3JBN|1|AA|A|629
3JBN|1|AA|U|630
3JBN|1|AA|U|631
3JBN|1|AA|U|632

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A5

60S ribosomal protein uL30

Chain AF

60S ribosomal protein uL4

Chain AI

60S ribosomal protein eL6