IL_3JBN_249

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUUUG*CUUUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBN_249 not in the Motif Atlas

Geometric match to IL_8SP9_002

Geometric discrepancy: 0.3295

The information below is about IL_8SP9_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

3JBN|1|AA|G|130
3JBN|1|AA|U|131
3JBN|1|AA|U|132
3JBN|1|AA|U|133
3JBN|1|AA|G|134
*
3JBN|1|AA|C|143
3JBN|1|AA|U|144
3JBN|1|AA|U|145
3JBN|1|AA|U|146
3JBN|1|AA|C|147

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A3

60S ribosomal protein uL29

Chain AY

60S ribosomal protein uL23

Chain Ac

60S ribosomal protein eL37