IL_3JBO_009

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CUACU*AUCG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_009 not in the Motif Atlas

Geometric match to IL_3LOA_001

Geometric discrepancy: 0.2876

The information below is about IL_3LOA_001

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

3JBO|1|A|C|119
3JBO|1|A|U|120
3JBO|1|A|A|121
3JBO|1|A|C|122
3JBO|1|A|U|123
*
3JBO|1|A|A|302
3JBO|1|A|U|303
3JBO|1|A|C|304
3JBO|1|A|G|305

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein eS4

Chain L

40S ribosomal protein eS8