IL_3JBO_028

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

AUCC*GAUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_028 not in the Motif Atlas

Geometric match to IL_4WF9_110

Geometric discrepancy: 0.2992

The information below is about IL_4WF9_110

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_51479.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

3JBO|1|A|A|757
3JBO|1|A|U|758
3JBO|1|A|C|759
3JBO|1|A|C|760
*
3JBO|1|A|G|787
3JBO|1|A|A|788
3JBO|1|A|U|789
3JBO|1|A|U|790

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein eS7