IL_3JBO_041
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- UGGG*UAA
- Length
- 7 nucleotides
- Bulged bases
- 3JBO|1|A|G|945
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBO_041 not in the Motif Atlas
- Geometric match to IL_3TD0_005
- Geometric discrepancy: 0.2035
- The information below is about IL_3TD0_005
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_57744.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
3JBO|1|A|U|943
3JBO|1|A|G|944
3JBO|1|A|G|945
3JBO|1|A|G|946
*
3JBO|1|A|U|1020
3JBO|1|A|A|1021
3JBO|1|A|A|1022
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain 3
- 40S ribosomal protein eS26
- Chain A6
- 60S ribosomal protein eL30
- Chain B
- 40S ribosomal protein eS1
- Chain U
- 40S ribosomal protein uS15
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