IL_3JBO_060

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

3JBO|1|A|U|1449

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_060 not in the Motif Atlas

Geometric match to IL_4V88_456

Geometric discrepancy: 0.2319

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

3JBO|1|A|A|1447
3JBO|1|A|U|1448
3JBO|1|A|U|1449
3JBO|1|A|A|1450
*
3JBO|1|A|U|1623
3JBO|1|A|U|1624
3JBO|1|A|C|1625
3JBO|1|A|U|1626

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein uS3

Chain M

40S ribosomal protein uS9

Chain N

40S ribosomal protein uS10