IL_3JBO_061

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CAU*AGGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_061 not in the Motif Atlas

Geometric match to IL_4V88_458

Geometric discrepancy: 0.163

The information below is about IL_4V88_458

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_58032.1

Basepair signature

cWW-tWH-cWW-L-L-R

Number of instances in this motif group

2

Unit IDs

3JBO|1|A|C|1635
3JBO|1|A|A|1636
3JBO|1|A|U|1637
*
3JBO|1|A|A|1653
3JBO|1|A|G|1654
3JBO|1|A|G|1655
3JBO|1|A|A|1656
3JBO|1|A|A|1657
3JBO|1|A|G|1658

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein uS7

Chain M

40S ribosomal protein uS9

Chain W

40S ribosomal protein eS17