IL_3JBO_065

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_065 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.2058

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

3JBO|1|A|G|1935
3JBO|1|A|C|1936
3JBO|1|A|C|1937
3JBO|1|A|C|1938
*
3JBO|1|A|G|2052
3JBO|1|A|U|2053
3JBO|1|A|A|2054
3JBO|1|A|A|2055
3JBO|1|A|C|2056

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain 7

Transfer RNA; tRNA

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain Ag

60S ribosomal protein eL41