IL_3JBO_067

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CGC*GAAG

Length

7 nucleotides

Bulged bases

3JBO|1|A|A|2048

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_067 not in the Motif Atlas

Geometric match to IL_4ZC7_002

Geometric discrepancy: 0.2542

The information below is about IL_4ZC7_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43275.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

3JBO|1|A|C|1941
3JBO|1|A|G|1942
3JBO|1|A|C|1943
*
3JBO|1|A|G|2046
3JBO|1|A|A|2047
3JBO|1|A|A|2048
3JBO|1|A|G|2049

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain Ag

60S ribosomal protein eL41

Chain Q

40S ribosomal protein uS12