IL_3JBO_075

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UUG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_075 not in the Motif Atlas

Geometric match to IL_4KYY_002

Geometric discrepancy: 0.1794

The information below is about IL_4KYY_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

3JBO|1|A|U|1970
3JBO|1|A|U|1971
3JBO|1|A|G|1972
*
3JBO|1|A|C|2018
3JBO|1|A|C|2019
3JBO|1|A|G|2020

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain A0

60S ribosomal protein eL24

Chain H

40S ribosomal protein eS6

Chain L

40S ribosomal protein eS8