IL_3JBO_076

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UGGAC*GGAAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_076 not in the Motif Atlas

Geometric match to IL_4V88_474

Geometric discrepancy: 0.1804

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

3JBO|1|A|U|1975
3JBO|1|A|G|1976
3JBO|1|A|G|1977
3JBO|1|A|A|1978
3JBO|1|A|C|1979
*
3JBO|1|A|G|2011
3JBO|1|A|G|2012
3JBO|1|A|A|2013
3JBO|1|A|A|2014
3JBO|1|A|A|2015

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain A0

60S ribosomal protein eL24

Chain H

40S ribosomal protein eS6

Chain L

40S ribosomal protein eS8