IL_3JBO_111

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_111 not in the Motif Atlas

Homologous match to IL_8C3A_033

Geometric discrepancy: 0.0979

The information below is about IL_8C3A_033

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

3JBO|1|AA|U|953
3JBO|1|AA|G|954
3JBO|1|AA|A|955
3JBO|1|AA|A|956
3JBO|1|AA|G|957
*
3JBO|1|AA|U|974
3JBO|1|AA|G|975
3JBO|1|AA|G|976
3JBO|1|AA|A|977
3JBO|1|AA|G|978

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein uL2

Chain AT

60S ribosomal protein eL19

Chain Ah

60S ribosomal protein eL43