IL_3JBO_120
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- GAUAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 3JBO|1|AA|U|1123, 3JBO|1|AA|A|1170, 3JBO|1|AA|A|1171
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBO_120 not in the Motif Atlas
- Homologous match to IL_8C3A_043
- Geometric discrepancy: 0.5621
- The information below is about IL_8C3A_043
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
3JBO|1|AA|G|1121
3JBO|1|AA|A|1122
3JBO|1|AA|U|1123
3JBO|1|AA|A|1124
3JBO|1|AA|A|1125
3JBO|1|AA|U|1126
*
3JBO|1|AA|A|1169
3JBO|1|AA|A|1170
3JBO|1|AA|A|1171
3JBO|1|AA|C|1172
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AB
- 5S ribosomal RNA; 5S rRNA
- Chain AQ
- 60S ribosomal protein uL16
- Chain AR
- 60S ribosomal protein uL18
- Chain AV
- 60S ribosomal protein eL21
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