IL_3JBO_121

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_121 not in the Motif Atlas

Geometric match to IL_6JDV_001

Geometric discrepancy: 0.1563

The information below is about IL_6JDV_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

3JBO|1|AA|A|1128
3JBO|1|AA|U|1129
3JBO|1|AA|U|1130
3JBO|1|AA|A|1131
*
3JBO|1|AA|U|1164
3JBO|1|AA|U|1165
3JBO|1|AA|C|1166
3JBO|1|AA|U|1167

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AB

5S ribosomal RNA; 5S rRNA

Chain AQ

60S ribosomal protein uL16

Chain AR

60S ribosomal protein uL18