IL_3JBO_147

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UUACC*GCAAUA

Length

11 nucleotides

Bulged bases

3JBO|1|AA|U|1971

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_147 not in the Motif Atlas

Homologous match to IL_8C3A_077

Geometric discrepancy: 0.2239

The information below is about IL_8C3A_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69313.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

3JBO|1|AA|U|1849
3JBO|1|AA|U|1850
3JBO|1|AA|A|1851
3JBO|1|AA|C|1852
3JBO|1|AA|C|1853
*
3JBO|1|AA|G|1967
3JBO|1|AA|C|1968
3JBO|1|AA|A|1969
3JBO|1|AA|A|1970
3JBO|1|AA|U|1971
3JBO|1|AA|A|1972

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain Aa

60S ribosomal protein eL34

Chain Ad

60S ribosomal protein eL38