IL_3JBO_157
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- AGUCGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 3JBO|1|AA|G|2628
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBO_157 not in the Motif Atlas
- Geometric match to IL_5TBW_077
- Geometric discrepancy: 0.2146
- The information below is about IL_5TBW_077
- Detailed Annotation
- Intercalated tWH
- Broad Annotation
- Intercalated tWH
- Motif group
- IL_06455.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
3JBO|1|AA|A|2169
3JBO|1|AA|G|2170
3JBO|1|AA|U|2171
3JBO|1|AA|C|2172
3JBO|1|AA|G|2173
3JBO|1|AA|G|2174
*
3JBO|1|AA|C|2626
3JBO|1|AA|U|2627
3JBO|1|AA|G|2628
3JBO|1|AA|U|2629
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AE
- 60S ribosomal protein uL3
- Chain AM
- 60S ribosomal protein uL14
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