IL_3JBO_162

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UGAAAAG*UAUUAACA

Length

15 nucleotides

Bulged bases

3JBO|1|AA|A|2452, 3JBO|1|AA|A|2453, 3JBO|1|AA|U|2468, 3JBO|1|AA|C|2472

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_162 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.1215

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

3JBO|1|AA|U|2449
3JBO|1|AA|G|2450
3JBO|1|AA|A|2451
3JBO|1|AA|A|2452
3JBO|1|AA|A|2453
3JBO|1|AA|A|2454
3JBO|1|AA|G|2455
*
3JBO|1|AA|U|2466
3JBO|1|AA|A|2467
3JBO|1|AA|U|2468
3JBO|1|AA|U|2469
3JBO|1|AA|A|2470
3JBO|1|AA|A|2471
3JBO|1|AA|C|2472
3JBO|1|AA|A|2473

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain AD

60S ribosomal protein uL2

Chain Ah

60S ribosomal protein eL43