IL_3JBO_169

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

3JBO|1|AA|A|2574, 3JBO|1|AA|C|2580, 3JBO|1|AA|C|2599

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_169 not in the Motif Atlas

Homologous match to IL_5TBW_090

Geometric discrepancy: 0.3696

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

3JBO|1|AA|C|2570
3JBO|1|AA|C|2571
3JBO|1|AA|A|2572
3JBO|1|AA|A|2573
3JBO|1|AA|A|2574
3JBO|1|AA|U|2575
3JBO|1|AA|G|2576
3JBO|1|AA|C|2577
3JBO|1|AA|C|2578
3JBO|1|AA|U|2579
3JBO|1|AA|C|2580
3JBO|1|AA|G|2581
*
3JBO|1|AA|C|2597
3JBO|1|AA|G|2598
3JBO|1|AA|C|2599
3JBO|1|AA|G|2600

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain Ag

60S ribosomal protein eL41