IL_3JBO_179

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UAUUU*AUA

Length

8 nucleotides

Bulged bases

3JBO|1|AA|U|3111

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_179 not in the Motif Atlas

Geometric match to IL_5J7L_009

Geometric discrepancy: 0.3051

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

3JBO|1|AA|U|3109
3JBO|1|AA|A|3110
3JBO|1|AA|U|3111
3JBO|1|AA|U|3112
3JBO|1|AA|U|3113
*
3JBO|1|AA|A|3145
3JBO|1|AA|U|3146
3JBO|1|AA|A|3147

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AL

60S ribosomal protein eL13

Chain AO

60S ribosomal protein uL15

Chain AS

60S ribosomal protein eL18

Chain Ai

60S ribosomal protein eL44