IL_3JBO_184

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

3JBO|1|AA|U|3219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_184 not in the Motif Atlas

Geometric match to IL_4V9F_084

Geometric discrepancy: 0.2386

The information below is about IL_4V9F_084

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

3JBO|1|AA|G|3187
3JBO|1|AA|U|3188
3JBO|1|AA|G|3189
*
3JBO|1|AA|U|3217
3JBO|1|AA|U|3218
3JBO|1|AA|U|3219
3JBO|1|AA|U|3220
3JBO|1|AA|U|3221

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein uL3

Chain AQ

60S ribosomal protein uL16