IL_3JBO_195

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UUGGUAC*GGAUUA

Length

13 nucleotides

Bulged bases

3JBO|1|AA|U|3419

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_195 not in the Motif Atlas

Geometric match to IL_7A0S_094

Geometric discrepancy: 0.3144

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.5

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

3JBO|1|AA|U|3405
3JBO|1|AA|U|3406
3JBO|1|AA|G|3407
3JBO|1|AA|G|3408
3JBO|1|AA|U|3409
3JBO|1|AA|A|3410
3JBO|1|AA|C|3411
*
3JBO|1|AA|G|3416
3JBO|1|AA|G|3417
3JBO|1|AA|A|3418
3JBO|1|AA|U|3419
3JBO|1|AA|U|3420
3JBO|1|AA|A|3421

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AH

60S ribosomal protein uL6

Chain AM

60S ribosomal protein uL14

Chain Af

60S ribosomal protein eL40