IL_3JBO_199

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GAUAAU*AGAAAC

Length

12 nucleotides

Bulged bases

3JBO|1|AA|A|3515

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_199 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.1888

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

3JBO|1|AA|G|3486
3JBO|1|AA|A|3487
3JBO|1|AA|U|3488
3JBO|1|AA|A|3489
3JBO|1|AA|A|3490
3JBO|1|AA|U|3491
*
3JBO|1|AA|A|3512
3JBO|1|AA|G|3513
3JBO|1|AA|A|3514
3JBO|1|AA|A|3515
3JBO|1|AA|A|3516
3JBO|1|AA|C|3517

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AH

60S ribosomal protein uL6

Chain AK

60S ribosomal protein uL13

Chain Af

60S ribosomal protein eL40