IL_3JBO_204

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UUUU*GCUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_204 not in the Motif Atlas

Geometric match to IL_1L9A_002

Geometric discrepancy: 0.2494

The information below is about IL_1L9A_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

3JBO|1|AA|U|3629
3JBO|1|AA|U|3630
3JBO|1|AA|U|3631
3JBO|1|AA|U|3632
*
3JBO|1|AA|G|3653
3JBO|1|AA|C|3654
3JBO|1|AA|U|3655
3JBO|1|AA|A|3656

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AI

60S ribosomal protein eL6

Chain AN

60S ribosomal protein eL14