3D structure

PDB id
3JBO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
5.8 Å

Loop

Sequence
UGAGCU*GAGCUG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JBO_205 not in the Motif Atlas
Geometric match to IL_5TBW_476
Geometric discrepancy: 0.3636
The information below is about IL_5TBW_476
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_31007.1
Basepair signature
cWW-L-R-L-R-L-R-L-R-cWW
Number of instances in this motif group
5

Unit IDs

3JBO|1|AA|U|3636
3JBO|1|AA|G|3637
3JBO|1|AA|A|3638
3JBO|1|AA|G|3639
3JBO|1|AA|C|3640
3JBO|1|AA|U|3641
*
3JBO|1|AA|G|3644
3JBO|1|AA|A|3645
3JBO|1|AA|G|3646
3JBO|1|AA|C|3647
3JBO|1|AA|U|3648
3JBO|1|AA|G|3649

Current chains

Chain AA
28S ribosomal RNA

Nearby chains

Chain AN
60S ribosomal protein eL14

Coloring options:


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