IL_3JBO_210

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UGUAAA*UUGAG

Length

11 nucleotides

Bulged bases

3JBO|1|AA|G|3761

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_210 not in the Motif Atlas

Homologous match to IL_5TBW_133

Geometric discrepancy: 0.1347

The information below is about IL_5TBW_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83162.8

Basepair signature

cWW-cWW-tSH-cWW-tHH-L

Number of instances in this motif group

4

Unit IDs

3JBO|1|AA|U|3724
3JBO|1|AA|G|3725
3JBO|1|AA|U|3726
3JBO|1|AA|A|3727
3JBO|1|AA|A|3728
3JBO|1|AA|A|3729
*
3JBO|1|AA|U|3759
3JBO|1|AA|U|3760
3JBO|1|AA|G|3761
3JBO|1|AA|A|3762
3JBO|1|AA|G|3763

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A0

60S ribosomal protein eL24

Chain AE

60S ribosomal protein uL3