IL_3JBO_212

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

AAAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_212 not in the Motif Atlas

Homologous match to IL_5TBW_135

Geometric discrepancy: 0.1993

The information below is about IL_5TBW_135

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

3JBO|1|AA|A|3734
3JBO|1|AA|A|3735
3JBO|1|AA|A|3736
3JBO|1|AA|G|3737
*
3JBO|1|AA|C|3752
3JBO|1|AA|G|3753
3JBO|1|AA|A|3754
3JBO|1|AA|U|3755

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A0

60S ribosomal protein eL24

Chain AT

60S ribosomal protein eL19

Chain AX

60S ribosomal protein eL22

Chain L

40S ribosomal protein eS8