IL_3JBO_213

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UA*UAA

Length

5 nucleotides

Bulged bases

3JBO|1|AB|A|63

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBO_213 not in the Motif Atlas

Geometric match to IL_5TBW_372

Geometric discrepancy: 0.2276

The information below is about IL_5TBW_372

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

3JBO|1|AB|U|15
3JBO|1|AB|A|16
*
3JBO|1|AB|U|62
3JBO|1|AB|A|63
3JBO|1|AB|A|64

Current chains

Chain AB

5S ribosomal RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain AG

60S ribosomal protein uL5

Chain AQ

60S ribosomal protein uL16

Chain AR

60S ribosomal protein uL18