IL_3JBO_219
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- GGUG*CGC
- Length
- 7 nucleotides
- Bulged bases
- 3JBO|1|AB|U|84
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBO_219 not in the Motif Atlas
- Geometric match to IL_3W3S_003
- Geometric discrepancy: 0.1414
- The information below is about IL_3W3S_003
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10167.6
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 51
Unit IDs
3JBO|1|AB|G|82
3JBO|1|AB|G|83
3JBO|1|AB|U|84
3JBO|1|AB|G|85
*
3JBO|1|AB|C|92
3JBO|1|AB|G|93
3JBO|1|AB|C|94
Current chains
- Chain AB
- 5S ribosomal RNA
Nearby chains
- Chain A5
- 60S ribosomal protein uL30
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AQ
- 60S ribosomal protein uL16
- Chain AU
- 60S ribosomal protein eL20
Coloring options: