IL_3JBO_220
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- CCGCAGCAAAAUGCGAUACGC*GAAUG
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBO_220 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.2421
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
3JBO|1|AC|C|48
3JBO|1|AC|C|49
3JBO|1|AC|G|50
3JBO|1|AC|C|51
3JBO|1|AC|A|52
3JBO|1|AC|G|53
3JBO|1|AC|C|54
3JBO|1|AC|A|55
3JBO|1|AC|A|56
3JBO|1|AC|A|57
3JBO|1|AC|A|58
3JBO|1|AC|U|59
3JBO|1|AC|G|60
3JBO|1|AC|C|61
3JBO|1|AC|G|62
3JBO|1|AC|A|63
3JBO|1|AC|U|64
3JBO|1|AC|A|65
3JBO|1|AC|C|66
3JBO|1|AC|G|67
3JBO|1|AC|C|68
*
3JBO|1|AC|G|99
3JBO|1|AC|A|100
3JBO|1|AC|A|101
3JBO|1|AC|U|102
3JBO|1|AC|G|103
Current chains
- Chain AC
- 5.8S ribosomal RNA
Nearby chains
- Chain A3
- 60S ribosomal protein uL29
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AY
- 60S ribosomal protein uL23
- Chain Ac
- 60S ribosomal protein eL37
- Chain Ae
- 60S ribosomal protein eL39
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