IL_3JBO_221
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- CAA*UCAG
- Length
- 7 nucleotides
- Bulged bases
- 3JBO|1|AC|A|98
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBO_221 not in the Motif Atlas
- Geometric match to IL_5TBW_145
- Geometric discrepancy: 0.2766
- The information below is about IL_5TBW_145
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_54650.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
3JBO|1|AC|C|68
3JBO|1|AC|A|69
3JBO|1|AC|A|70
*
3JBO|1|AC|U|96
3JBO|1|AC|C|97
3JBO|1|AC|A|98
3JBO|1|AC|G|99
Current chains
- Chain AC
- 5.8S ribosomal RNA
Nearby chains
- Chain A3
- 60S ribosomal protein uL29
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AZ
- 60S ribosomal protein uL24
- Chain Ac
- 60S ribosomal protein eL37
Coloring options: