3D structure

PDB id
3JBO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
5.8 Å

Loop

Sequence
GGUUAAU*AAUUGUC
Length
14 nucleotides
Bulged bases
3JBO|1|AA|G|119, 3JBO|1|AA|U|120, 3JBO|1|AA|U|121, 3JBO|1|AA|U|156
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3JBO|1|AA|G|118
3JBO|1|AA|G|119
3JBO|1|AA|U|120
3JBO|1|AA|U|121
3JBO|1|AA|A|122
3JBO|1|AA|A|123
3JBO|1|AA|U|124
*
3JBO|1|AA|A|153
3JBO|1|AA|A|154
3JBO|1|AA|U|155
3JBO|1|AA|U|156
3JBO|1|AA|G|157
3JBO|1|AA|U|158
3JBO|1|AA|C|159

Current chains

Chain AA
28S ribosomal RNA

Nearby chains

Chain A3
60S ribosomal protein uL29
Chain AC
5.8S ribosomal RNA; 5.8S rRNA
Chain AJ
60S ribosomal protein eL8
Chain AP
60S ribosomal protein eL15
Chain Ab
60S ribosomal protein eL36

Coloring options:

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