IL_3JBO_230
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- GAGAC*GUUC
- Length
- 9 nucleotides
- Bulged bases
- 3JBO|1|AA|A|346
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBO_230 not in the Motif Atlas
- Geometric match to IL_7A0S_040
- Geometric discrepancy: 0.3192
- The information below is about IL_7A0S_040
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71194.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
3JBO|1|AA|G|343
3JBO|1|AA|A|344
3JBO|1|AA|G|345
3JBO|1|AA|A|346
3JBO|1|AA|C|347
*
3JBO|1|AC|G|29
3JBO|1|AC|U|30
3JBO|1|AC|U|31
3JBO|1|AC|C|32
Current chains
- Chain AA
- 28S ribosomal RNA
- Chain AC
- 5.8S ribosomal RNA
Nearby chains
- Chain AF
- 60S ribosomal protein uL4
- Chain AL
- 60S ribosomal protein eL13
- Chain AZ
- 60S ribosomal protein uL24
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