IL_3JBP_011

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

CUACU*AUCG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBP_011 not in the Motif Atlas

Geometric match to IL_3LOA_001

Geometric discrepancy: 0.2952

The information below is about IL_3LOA_001

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_60988.2

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

3JBP|1|A|C|119
3JBP|1|A|U|120
3JBP|1|A|A|121
3JBP|1|A|C|122
3JBP|1|A|U|123
*
3JBP|1|A|A|302
3JBP|1|A|U|303
3JBP|1|A|C|304
3JBP|1|A|G|305

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein eS4

Chain L

40S ribosomal protein eS8