IL_3JBP_032

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

3JBP|1|A|A|866

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBP_032 not in the Motif Atlas

Geometric match to IL_7RQB_073

Geometric discrepancy: 0.1664

The information below is about IL_7RQB_073

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_88739.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

3JBP|1|A|A|796
3JBP|1|A|C|797
*
3JBP|1|A|G|865
3JBP|1|A|A|866
3JBP|1|A|A|867
3JBP|1|A|U|868

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein eS7

Chain K

40S ribosomal protein uS8

Chain Q

40S ribosomal protein uS12

Chain V

40S ribosomal protein uS17