IL_3JBP_034
3D structure
- PDB id
- 3JBP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.7 Å
Loop
- Sequence
- GAGUAAAUU*ACUAUAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBP_034 not in the Motif Atlas
- Geometric match to IL_4V88_425
- Geometric discrepancy: 0.3944
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
3JBP|1|A|G|801
3JBP|1|A|A|802
3JBP|1|A|G|803
3JBP|1|A|U|804
3JBP|1|A|A|805
3JBP|1|A|A|806
3JBP|1|A|A|807
3JBP|1|A|U|808
3JBP|1|A|U|809
*
3JBP|1|A|A|854
3JBP|1|A|C|855
3JBP|1|A|U|856
3JBP|1|A|A|857
3JBP|1|A|U|858
3JBP|1|A|A|859
3JBP|1|A|G|860
3JBP|1|A|C|861
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein uS4
- Chain F
- 40S ribosomal protein eS4
- Chain K
- 40S ribosomal protein uS8
- Chain V
- 40S ribosomal protein uS17
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