IL_3JBP_049
3D structure
- PDB id
- 3JBP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.7 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 3JBP|1|A|U|1199, 3JBP|1|A|G|1201
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBP_049 not in the Motif Atlas
- Geometric match to IL_5Z1I_003
- Geometric discrepancy: 0.1645
- The information below is about IL_5Z1I_003
- Detailed Annotation
- Decoding loop related
- Broad Annotation
- Decoding loop related
- Motif group
- IL_31737.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
3JBP|1|A|C|1103
3JBP|1|A|G|1104
3JBP|1|A|A|1105
*
3JBP|1|A|U|1196
3JBP|1|A|C|1197
3JBP|1|A|U|1198
3JBP|1|A|U|1199
3JBP|1|A|U|1200
3JBP|1|A|G|1201
3JBP|1|A|G|1202
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein uS5
- Chain K
- 40S ribosomal protein uS8
- Chain Q
- 40S ribosomal protein uS12
- Chain U
- 40S ribosomal protein uS15
- Chain V
- 40S ribosomal protein uS17
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