IL_3JBP_080
3D structure
- PDB id
- 3JBP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.7 Å
Loop
- Sequence
- UGAA*UAAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBP_080 not in the Motif Atlas
- Geometric match to IL_4V88_471
- Geometric discrepancy: 0.1581
- The information below is about IL_4V88_471
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
3JBP|1|A|U|1966
3JBP|1|A|G|1967
3JBP|1|A|A|1968
3JBP|1|A|A|1969
*
3JBP|1|A|U|2021
3JBP|1|A|A|2022
3JBP|1|A|A|2023
3JBP|1|A|A|2024
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain A0
- 60S ribosomal protein eL24
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain H
- 40S ribosomal protein eS6
- Chain L
- 40S ribosomal protein eS8
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