IL_3JBP_102

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

AUUUA*UAUUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBP_102 not in the Motif Atlas

Geometric match to IL_4V88_422

Geometric discrepancy: 0.3524

The information below is about IL_4V88_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

3JBP|1|AA|A|523
3JBP|1|AA|U|524
3JBP|1|AA|U|525
3JBP|1|AA|U|526
3JBP|1|AA|A|527
*
3JBP|1|AA|U|628
3JBP|1|AA|A|629
3JBP|1|AA|U|630
3JBP|1|AA|U|631
3JBP|1|AA|U|632

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A5

60S ribosomal protein uL30

Chain AF

60S ribosomal protein uL4

Chain AI

60S ribosomal protein eL6