IL_3JBP_116

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBP_116 not in the Motif Atlas

Geometric match to IL_5J7L_263

Geometric discrepancy: 0.0984

The information below is about IL_5J7L_263

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

3JBP|1|AA|U|953
3JBP|1|AA|G|954
3JBP|1|AA|A|955
3JBP|1|AA|A|956
3JBP|1|AA|G|957
*
3JBP|1|AA|U|974
3JBP|1|AA|G|975
3JBP|1|AA|G|976
3JBP|1|AA|A|977
3JBP|1|AA|G|978

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein uL2

Chain AT

60S ribosomal protein eL19

Chain Ah

60S ribosomal protein eL43