IL_3JBP_133

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

UGCCUAAA*UA

Length

10 nucleotides

Bulged bases

3JBP|1|AA|A|1306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBP_133 not in the Motif Atlas

Geometric match to IL_4V9F_038

Geometric discrepancy: 0.1526

The information below is about IL_4V9F_038

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

3JBP|1|AA|U|1301
3JBP|1|AA|G|1302
3JBP|1|AA|C|1303
3JBP|1|AA|C|1304
3JBP|1|AA|U|1305
3JBP|1|AA|A|1306
3JBP|1|AA|A|1307
3JBP|1|AA|A|1308
*
3JBP|1|AA|U|1453
3JBP|1|AA|A|1454

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A5

60S ribosomal protein uL30

Chain A9

60S ribosomal protein eL33

Chain AK

60S ribosomal protein uL13

Chain AU

60S ribosomal protein eL20