IL_3JBP_136
3D structure
- PDB id
- 3JBP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.7 Å
Loop
- Sequence
- GAUCCCAUAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 3JBP|1|AA|U|1324, 3JBP|1|AA|A|1430
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBP_136 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.1162
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
3JBP|1|AA|G|1322
3JBP|1|AA|A|1323
3JBP|1|AA|U|1324
3JBP|1|AA|C|1325
3JBP|1|AA|C|1326
3JBP|1|AA|C|1327
3JBP|1|AA|A|1328
3JBP|1|AA|U|1329
3JBP|1|AA|A|1330
3JBP|1|AA|A|1331
3JBP|1|AA|A|1332
3JBP|1|AA|A|1333
*
3JBP|1|AA|U|1427
3JBP|1|AA|G|1428
3JBP|1|AA|A|1429
3JBP|1|AA|A|1430
3JBP|1|AA|A|1431
3JBP|1|AA|A|1432
3JBP|1|AA|U|1433
3JBP|1|AA|G|1434
3JBP|1|AA|G|1435
3JBP|1|AA|A|1436
3JBP|1|AA|U|1437
3JBP|1|AA|G|1438
3JBP|1|AA|G|1439
3JBP|1|AA|C|1440
3JBP|1|AA|G|1441
3JBP|1|AA|C|1442
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A5
- 60S ribosomal protein uL30
- Chain A9
- 60S ribosomal protein eL33
- Chain AB
- 5S ribosomal RNA; 5S rRNA
- Chain AE
- 60S ribosomal protein uL3
- Chain AK
- 60S ribosomal protein uL13
- Chain AQ
- 60S ribosomal protein uL16
- Chain Af
- 60S ribosomal protein eL40
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