IL_3JBP_160

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

3JBP|1|AA|G|2628

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBP_160 not in the Motif Atlas

Homologous match to IL_5TBW_077

Geometric discrepancy: 0.1243

The information below is about IL_5TBW_077

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

3JBP|1|AA|A|2169
3JBP|1|AA|G|2170
3JBP|1|AA|U|2171
3JBP|1|AA|C|2172
3JBP|1|AA|G|2173
3JBP|1|AA|G|2174
*
3JBP|1|AA|C|2626
3JBP|1|AA|U|2627
3JBP|1|AA|G|2628
3JBP|1|AA|U|2629

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein uL3

Chain AM

60S ribosomal protein uL14