IL_3JBP_161
3D structure
- PDB id
- 3JBP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.7 Å
Loop
- Sequence
- CGUAAC*GGAAAAG
- Length
- 13 nucleotides
- Bulged bases
- 3JBP|1|AA|A|2199
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBP_161 not in the Motif Atlas
- Homologous match to IL_8C3A_084
- Geometric discrepancy: 0.0867
- The information below is about IL_8C3A_084
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65969.4
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
3JBP|1|AA|C|2186
3JBP|1|AA|G|2187
3JBP|1|AA|U|2188
3JBP|1|AA|A|2189
3JBP|1|AA|A|2190
3JBP|1|AA|C|2191
*
3JBP|1|AA|G|2196
3JBP|1|AA|G|2197
3JBP|1|AA|A|2198
3JBP|1|AA|A|2199
3JBP|1|AA|A|2200
3JBP|1|AA|A|2201
3JBP|1|AA|G|2202
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain AT
- 60S ribosomal protein eL19
- Chain Ag
- 60S ribosomal protein eL41
- Chain Ah
- 60S ribosomal protein eL43
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