IL_3JBP_172

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

3JBP|1|AA|A|2574, 3JBP|1|AA|C|2580, 3JBP|1|AA|C|2599

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBP_172 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.2076

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

3JBP|1|AA|C|2570
3JBP|1|AA|C|2571
3JBP|1|AA|A|2572
3JBP|1|AA|A|2573
3JBP|1|AA|A|2574
3JBP|1|AA|U|2575
3JBP|1|AA|G|2576
3JBP|1|AA|C|2577
3JBP|1|AA|C|2578
3JBP|1|AA|U|2579
3JBP|1|AA|C|2580
3JBP|1|AA|G|2581
*
3JBP|1|AA|C|2597
3JBP|1|AA|G|2598
3JBP|1|AA|C|2599
3JBP|1|AA|G|2600

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain Ag

60S ribosomal protein eL41