IL_3JBP_199
3D structure
- PDB id
- 3JBP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.7 Å
Loop
- Sequence
- UUGGUAC*GGAUUA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBP_199 not in the Motif Atlas
- Geometric match to IL_4V9F_019
- Geometric discrepancy: 0.1674
- The information below is about IL_4V9F_019
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_16458.6
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
3JBP|1|AA|U|3405
3JBP|1|AA|U|3406
3JBP|1|AA|G|3407
3JBP|1|AA|G|3408
3JBP|1|AA|U|3409
3JBP|1|AA|A|3410
3JBP|1|AA|C|3411
*
3JBP|1|AA|G|3416
3JBP|1|AA|G|3417
3JBP|1|AA|A|3418
3JBP|1|AA|U|3419
3JBP|1|AA|U|3420
3JBP|1|AA|A|3421
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AH
- 60S ribosomal protein uL6
- Chain AM
- 60S ribosomal protein uL14
- Chain Af
- 60S ribosomal protein eL40
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