IL_3JBP_213

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

UGUAAA*UUGAG

Length

11 nucleotides

Bulged bases

3JBP|1|AA|G|3761

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBP_213 not in the Motif Atlas

Homologous match to IL_8C3A_139

Geometric discrepancy: 0.1149

The information below is about IL_8C3A_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83162.8

Basepair signature

cWW-cWW-tSH-cWW-tHH-L

Number of instances in this motif group

4

Unit IDs

3JBP|1|AA|U|3724
3JBP|1|AA|G|3725
3JBP|1|AA|U|3726
3JBP|1|AA|A|3727
3JBP|1|AA|A|3728
3JBP|1|AA|A|3729
*
3JBP|1|AA|U|3759
3JBP|1|AA|U|3760
3JBP|1|AA|G|3761
3JBP|1|AA|A|3762
3JBP|1|AA|G|3763

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A0

60S ribosomal protein eL24

Chain A7

60S ribosomal protein eL31

Chain AE

60S ribosomal protein uL3