IL_3JBP_228
3D structure
- PDB id
- 3JBP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.7 Å
Loop
- Sequence
- CCUGCU*AGAGG
- Length
- 11 nucleotides
- Bulged bases
- 3JBP|1|A|G|1443
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JBP_228 not in the Motif Atlas
- Geometric match to IL_7VYX_004
- Geometric discrepancy: 0.3755
- The information below is about IL_7VYX_004
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
3JBP|1|A|C|1440
3JBP|1|A|C|1441
3JBP|1|A|U|1442
3JBP|1|A|G|1443
3JBP|1|A|C|1444
3JBP|1|A|U|1445
*
3JBP|1|A|A|1628
3JBP|1|A|G|1629
3JBP|1|A|A|1630
3JBP|1|A|G|1631
3JBP|1|A|G|1632
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain M
- 40S ribosomal protein uS9
- Chain N
- 40S ribosomal protein uS10
- Chain W
- 40S ribosomal protein eS17
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