IL_3JBP_238

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

UGCU*AGA

Length

7 nucleotides

Bulged bases

3JBP|1|A|G|1443

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JBP_238 not in the Motif Atlas

Homologous match to IL_8P9A_444

Geometric discrepancy: 0.4921

The information below is about IL_8P9A_444

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

3JBP|1|A|U|1442
3JBP|1|A|G|1443
3JBP|1|A|C|1444
3JBP|1|A|U|1445
*
3JBP|1|A|A|1628
3JBP|1|A|G|1629
3JBP|1|A|A|1630

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain M

40S ribosomal protein uS9

Chain N

40S ribosomal protein uS10